• Issue

    WIREs Computational Molecular Science: Volume 9, Issue 3

    May/June 2019

Issue Information

Free Access

Issue information

  • First Published: 13 April 2019

Overview

Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity

  • First Published: 27 September 2018
Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity Issue 3, 2019

Biomolecular simulations reveal mechanisms, dynamics, and interactions of biological molecules. Here, molecular dynamics simulation of the enzyme MalL reveal structural and dynamical changes in the protein during its catalytic cycle; these simulations allow calculation of the activation heat capacity that explains the optimum temperature of its catalytic activity.

Perspective

Advances and challenges in deep generative models for de novo molecule generation

  • First Published: 19 October 2018
Advances and challenges in deep generative models for de novo molecule generation Issue 3, 2019

Distinctive deep generative models open a new path for efficient de novo molecule generation in computational molecular science. The framework of five distinctive deep generative models, for example, VAE-based, AAE-based, GAN-based, RNN-based, and hybrid models coupling with reinforcement learning are briefly described, providing a visual and general understanding of the underlying rationales of these models for molecule design.

Advanced Review

Parity violation

  • First Published: 02 January 2019
Parity violation Issue 3, 2019

Violation of the fundamental symmetry with respect to spatial inversion (parity, P) gives rise to an energy difference between nonidentical mirror image molecules. This and other consequences of parity violation in physics, chemistry and biology are discussed.

Focus Article

Exploring high-dimensional free energy landscapes of chemical reactions

  • First Published: 16 November 2018
Exploring high-dimensional free energy landscapes of chemical reactions Issue 3, 2019

Advanced methods to efficiently explore the free energy landscapes of chemical reactions are discussed in this review.