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WIREs Computational Molecular Science: Volume 9, Issue 3
May/June 2019
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Issue Information
Overview
Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity
- First Published: 27 September 2018
Biomolecular simulations reveal mechanisms, dynamics, and interactions of biological molecules. Here, molecular dynamics simulation of the enzyme MalL reveal structural and dynamical changes in the protein during its catalytic cycle; these simulations allow calculation of the activation heat capacity that explains the optimum temperature of its catalytic activity.
Perspective
Advances and challenges in deep generative models for de novo molecule generation
- First Published: 19 October 2018
Distinctive deep generative models open a new path for efficient de novo molecule generation in computational molecular science. The framework of five distinctive deep generative models, for example, VAE-based, AAE-based, GAN-based, RNN-based, and hybrid models coupling with reinforcement learning are briefly described, providing a visual and general understanding of the underlying rationales of these models for molecule design.
Advanced Review
Overview
Computer-aided drug design in new druggable targets for the next generation of immune-oncology therapies
- First Published: 29 October 2018
Focus Article
Exploring high-dimensional free energy landscapes of chemical reactions
- First Published: 16 November 2018